BIOT-2008 Papers



Deterministic Graph-Theoretic Algorithm for Detecting Modules in Biological Interaction Networks
Roger Chang, Feng Luo, Stuart Johnson and Richard H. Scheuermann
Full text available

Assessing and Improving the Accuracy of Detecting Molecular Adaptation with the TreeSAAP Analytical Software
David McClellan and David Ellison
Full text available

Flavitrack Analysis of the Structure and Function of West Nile Non-structural Proteins
Petr Danecek and Catherine Schein

Reconstructing the Sequences of Broken Transposable Elements
Abanish Singh, Umeshkumar Keswani, David Levine, Cedric Feschotte and Nikola Stojanovic
Full text available

REPCLASS: A Software Workflow Toolset for Automated Classification of Transposable Elements
Umeshkumar Keswani, Nirmal Ranganathan, Cedric Feschotte and David Levine
Full text available

A Multi-pronged Parallel Approach to Enhance Speed and Accuracy of Sequence Assembly
Munib Ahmed, Mohammad Saad Ahmad and Ishfaq Ahmad

Towards Understanding the Relations Among Co-expressions, Annotations and Co-regulations
Raja Loganantharaj and Jun Chung
Full text available

Strategies for Enhanced Annotation of a Microarray Probe Set
TuShun R. Powers, Selene M. Virk and Elba E. Serrano
Full text available

Gene Selection through Association Rule Filtering for Supervised Classification
Prerna Sethi

A Frequent Itemset-Nearest Neighbor Based Approach for Clustering Gene Expression Data
Rosy Das, D.K. Bhattacharyya and J.K. Kalita
Full text available

Wavelets-Based Dimensionality Reduction for Gene Expression Feature Extraction
Sumeet Dua and Kaustubh S. Sabnis

Ranking through Integration of Protein-Similarity for Identification of Cell-cyclic Genes
Sumeet Dua, Pradeep Chowriappa and Alan Alex

An Automated 3D Image-Processing Strategy for Small Animal Bioluminescence Cancer Studies
Nikolai V. Slavine, Roderick W. McColl, Edmond Richer, Ralph P. Mason and Peter P. Antich
Full text available

Influence of Red Blood Cell Deformation and Clustering on CO Uptake
Yaling Liu and Wing Kam Liu

On a Divide and Conquer Approach for Haplotype Inference with Pure Parsimony
Konstantinos Kalpakis and Parag Namjoshi

A Web-based System for Phenotypic and Genotypic Data Integration and Exploration
Angelo Nuzzo, Alberto Riva and Riccardo Bellazzi

Scalable Biomedical Named Entity Recognition: Investigation of a Database-Supported SVM Approach
Mona Soliman Habib and Jugal Kalita
Full text available

Mining Cytochrome b561 from Plant Genomes
Stephen O. Opiyo and Etsuko N. Moriyama
Full text available

Nonlinear Identification of Recombinant E. coli Fed-Batch Fermentation with a Hybrid Method
Mahdi Feyzdar, Valiollah Babaeipure and Ahmad Reza Vali

Biotechnology's Impact on Higher Education
Julia Susan Frink