Biotechnology and Bioinformatics Symposium (BIOT-2009)
October 9-10, 2009
Lincoln, Nebraska
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General Symposium Information [Meeting locations] All BIOT-2009
activities take place in Nebraska Union (#17 in the UNL City Campus Map). See
the Nebraska Union Map for location of the rooms: • Registration:
Auditorium • Refreshments,
lunch: Regency, Heritage, Ballroom (see the program) • Oral
presentations: Auditorium • Banquet:
Ballroom • Poster
session: Ballroom Note: SCID
workshop on Oct 11 takes place in Avery Hall (#32 in the UNL City Campus Map). [Registration] Registration
desk will be open during the symposium at the Auditorium. You need to pick up
your nametag and Proceedings book. The nametag will be required for meals at
the symposium. [Student/postdoc
scholarship awards] IMPORTANT! If you received scholarship, you need to obtain your reimbursement forms at the registration desk. If you fail to pickup your reimbursement form during the symposium, you will not be able to receive your reimbursement. IMPORTANT! If you received scholarship, you need to submit at least two surveys on posters other than yours. Please see the Poster Survey requirements for details at the Posters section below. [Oral presentation] • All oral presentations are given in the Auditorium. • Both Macintosh and Windows laptops with PowerPoint will be available. • The length of a talk is 30 minutes for a full paper (shown with an
F-number) and 20 minutes for an extended abstract (shown with an E-number).
Please keep 3-5 minutes at the end of your talk for Q & A. • All presenters, please copy your slide files to the laptop during the break before your
presentation. • Poster space will be also available for all accepted papers and
extended (2-page) abstracts. See below for the information for poster
presentation. [Posters] IMPORTANT! As a condition of receiving the NSF Travel Scholarship funding, BIOT-2009 is required to provide mentoring for young reseachers at the symposium. Therefore, we welcome feedback on all posters will duly relay your feedback to the poster presenters after BIOT-2009. Furthermore, to encourage the exchange of ideas and community building, as part of the NSF Travel Scholarship program, each scholarship recipient is required to submit at least two surveys in order for his or her scholarship award to be official. At the end of BIOT-2009, we will select a poster based on the surveys for the Best Poster Award. Please return your surveys to the designated Survey Return Box by 12:00 noon on October 10. (Note: The survey form can be found at the bottom of this webpage. We will also distribute paper copies of the survey at the BIOT-2009 venues.) • Poster session is in the Ballroom. Refreshments will be provided during the
poster session. • See the program when you need to be at your poster. • Poster Size: 3.5' or 42" (width)
x 7' or 84" (height). Two posters may share the same poster board. So do
not exceed the maximum width. Pushpins will be provided. • When to put up posters: Posters can be
put up any time from 12:00 pm to 5:30 pm on Oct 9 (Fri). Find your poster
number on the board. • When to take down posters: Please remove
your posters by 1:00 pm on Oct 10 (Sat). All posters left after this time will
be discarded. BIOT-2009 Program
Posters (With author permission, some abstracts are posted as PDF files) IMPORTANT! As a condition of receiving the NSF Travel Scholarship funding, BIOT-2009 is required to provide mentoring for young reseachers at the symposium. Therefore, we welcome feedback on all posters will duly relay your feedback to the poster presenters after BIOT-2009. Furthermore, to encourage the exchange of ideas and community building, as part of the NSF Travel Scholarship program, each scholarship recipient is required to submit at least two surveys in order for his or her scholarship award to be official. At the end of BIOT-2009, we will select a poster based on the surveys for the Best Poster Award. Please return your surveys to the designated Survey Return Box by 12:00 noon on October 10. (Note: The survey form can be found at the bottom of this webpage. We will also distribute paper copies of the survey at the BIOT-2009 venues.) P427. MicroRNA target prediction and verification in the
green alga Chlamydomonas reinhardtii
(PDF)
Adam Voshall, Etsuko N.
Moriyama, and Heriberto Cerutti P672. Screening for
anti-angiogenic natural inhibitors for vascular endothelial growth factor receptor
- An in silico approach
(PDF)
Subhojyoti Chatterjee, Deepak Choubey, Biplab
Bhattacharjee, Anantharamanan. R., Jayadeepa R. M., Anirudh
Chowdhary, Sushil K. Middha, and Usha Talambedu P686. Molecular basis of
homocystinuria: identification of mutation in cystathionine beta synthase (CBS)
gene M.
A. Kausar and M. D. Bashyam P1192. Tools for
identifying homogenous subgroups in large data Yuanyuan Huang, Heike Hofmann, and Dianne Cook P1297. Biosynthetic engineering of HSAF, a tetramic
acid-containing antifungal macrolactam isolated from the biocontrol agent
Lysobacter enzymogenes C3 Yunxuan Xie, Yaoyao Li, Lili Lou, and Lingcheng
Du P1333. Extraction of
globular proteins with reverse micelles using vegetable oils as the organic
medium Daliya A. George, Cheuk-Man Chu, and David C.
Stuckey P1427. Matched filter
for signature extraction in bioinformatics data set
(PDF)
Ming Li and William Q. Meeker P1439. Bioinformatics
investigation: examination of two algal proteomes in search of
carbon-concentrating mechanism components
(PDF)
Andrew Brueggeman, Istvan Ladunga, and Donald
Weeks P1446. Phylogenetic
analysis of H1N1 2009 influenza virus
(PDF)
Ameer Shaik, Aparna Sriram, Sri Harsha
Muppaneni, Teja Polapragada, and Zhong-Hui Duan P1447. Graphical
framework for processing GCMS data: integration of qt interfaces Marie Vendettuoli, Michael Lawrence, Dianne
Cook, and Heike Hofmann P1454. Immune-enhancing
antitumor RNA interference therapy for cervical cancer Richa Singhania, Wenyi Gu,
and Nigel McMillan P1456. Layout of
phylogenetic networks and multi-labeled trees
(PDF)
Poornima Venugopal and Sergey Bereg P1466.
Intraperitoneal delivery of liposomal siRNA for therapy of cervical cancer Akul Singhania, Sherry Y. Wu, and Nigel A. J.
McMillan P1467. Knock down of
CXCR2 enhances sensitivity to chemotherapy
(PDF)
Dhananjay M. Nawandar, Michelle L. Varney, and
Rakesh K. Singh P1468. Integrating
EST's and high-throughput sequencing to identify orthologous loci for
phylogenomic analysis: a case study among basal ray-finned fishes
(Actinopterygii) Jason Macrander and Guillermo Orti P1474. Identifying
differentially expressed human lung microRNAs and their molecular functions
(PDF)
Sarita Limbu and Zhong-Hui Duan P1475. Development of
technologies to monitor chromatin proteins in small cell numbers for
applications in assisted reproductive technology
(PDF)
Dipika Singh, Janos Zempleni, and Angela
Pannier P1484. SUMO (small-ubiquitin-like
modifier) in subcellular fractions of Chlamydomonas
reinhardtii reveals potential functions Amy R. Knobbe, Kempton Horken, Stephanie
Matejka, Don Weeks, and Cheryl P. Bailey P1486. Establishing
influenza A viral mutation database through literature
and data mining
(PDF)
Ambreen Kedwaii, Pavan Kumar Attaluri, and
Guoqing Lu
P1489. Enhancement of
homologous recombination in the model organism Chlamydomonas reinhardtii .. Thomas M. Plucinak and Donald P. Weeks P1490. An SVM-based
method for linear B-cell epitope prediction by introducing a new tri-peptides
Kernel
(PDF)
Bo Yao and Chi Zhang P1492. Pattern detection
in the motor protein prestin: a collaborative approach K. Dempsey, B. Currall, D. Bastola, R.
Hallworth, and H. Ali P1495. A Web-based
tool for rigidity analysis of proteins
(PDF)
Naomi Fox, Filip Jagodzinski, Yang Li, and
Ileana Streinu P1497. Coevolution
between PKD1 and PKD2 Wenhu Guo and Chun Ye P1498. A software
tool for surveying the rigidity properties of protein families
(PDF)
Filip Jagodzinski, Diana Jaunzeikare, Naomi
Fox, and Ileana Streinu P1499. A new approach
to compare biological sequences based on motif alphabets Ramez Mina, Dhundy Bastola, and Hesham Ali P1500. Molecular
phylogeny and evolution of pepsinogen subfamily Michael Wachholtz, Jin-Liang Zhao, and Guoqing
Lu P1503. Evolution of
gram-negative bacteria: a view from lipid A biosynthesis enzymes
(PDF)
Stephen O. Opiyo, Rosevelt L. Pardy, Hideaki
Moriyama, and Etsuko N. Moriyama P1517. Chromosome
specific detection of NOCTH protein binding sites on mouse genome using
Chip-Seq Zhijie Jiang, Prathibha Ranganathan, Anthony
J. Capobianco, and Nicholas F. Tsinoremas P1519. Comparative
genome hybridization of maize inbreds and their wild ancestor, teosinte Kai Ying, Nathan M. Springer, Yan Fu, Tieming
Ji, Cheng-Ting Yeh, Yi Jia, Wei Wu, Todd Richmond, Jacob Kitzman, Heidi
Rosenbaum, A. Leonardo Iniguez, W. Brad Barbazuk, Jeffrey A. Jeddeloh, Dan
Nettleton, and Patrick S. Schnable P1567. Phylomarker:
mining phylogenetic markers through comparative genomics of model species and
data mining of public repositories Thaine W. Rowley, Chenhong Li, and Guoqing Lu P1568. Genome-wide
comparison of G-protein coupled receptors in model fish species Kanwal Naeem, Etsuko N. Moriyama, and Guoqing
Lu P1590. Sorting
through the sequence: making sense of microbial communities with amplicon
pyrosequencing
(PDF)
Ryan Legge, Andrew Benson, and Etsuko Moriyama P1596. Proteomics
reconstruction of chemotaxis and acrosome reaction signaling pathways in sea
star sperm
(PDF)
Yuyan Shelly Xue and Hideaki Moriyama P1612. Hypoglycemic
effects and chemical constituents of some indigenous medicinal plants from
Lawacherra rain forest of Bangladesh
(PDF)
Md. Ariful Haque Mollik, Romeo McField, Anup
Chowdhury, Kishore Kumar Thapa, Md. Badruddaza, Md. Torikul Islam, Azmal Ibna
Hassan, Md. Saroar Shadique, and Bulbul Ahmmed P1614. Development
and use of the AllergenOnline.org curated protein database for assessing the
potential allergenicity of genetically modified organisms and novel food
ingredients
(PDF)
John Wise, Steve L. Taylor, and Richard E.
Goodman P1655.
Species-specific duplications of trace amine-associated receptors in vertebrate
genomes
(PDF)
Seong-il Eyun and Etsuko N. Moriyama P1657. Discovering
SNP association patterns with spatial constraint using data mining approach Fangrui Ma, Liying Jiang, Etsuko Moriyama, and
Jitender S. Deogun P1659. A web
application for the analysis of differential histone modification states from
ChIP-seq data .. Sridhar A Malkaram, Rong Liu, Michael Fromm,
and Jean-Jack M Riethoven P1664. Comparative
miRNA analysis in pathogenic fungi
(PDF)
Kanika Jain and B.B. Chattoo P1798. An all-atom knowledge-based energy function for protein-DNA interaction
(PDF)
Yuedong Yang, Beisi Xu, and Yaoqi Zhou P1799. State of theart continuous local structure prediction and its usefulness for fragment-free protein structure determination
(PDF)
Eshel Faraggi, Yuedong Yang, Shesheng Zhang, and Yaoqi Zhou P1926. Phylogenetic analaysis of the Tribe Cylcocepalini (Coleoptera: Scarabaeidae: Dynastinae) Daniel Clark P1928. Exploring phenotypic variation in Cyclocephala sexpunctata and allied species Matthew Moore | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||